Gotcha. so it sounds like I should just treat them as separate. A Mii, game progress etc tied to each console.
The X-Box has never been very good at this either. I wouldn't know about the new One but I found that progress and similar were a real pain to use or even move across consoles. The PS3, and now the PS4 was pretty good at it as they did take a network friendly approach. Still not perfect but I think Sony is the closest. Apps syncing cleanly (and transparently across iOS and OSX via iCloud has me spoiled. I'd think the game systems would have that ironed out.